API

Submodules

tomogui.gui.MainWidget module

class tomogui.gui.MainWidget.TomoguiMainWindow(showOnlyReconsOpt=False, mockNoFreeart=False)

Bases: PyQt5.QtWidgets.QWidget

Window proposing all the possibility to use tomogui

LAYOUT_INDEX_LIMIT = 100

mainWindow

The tomogui project main window

creator

The tomogui absorption matrix creator

launchAbsMatCreator()

launchTomoguiproject()

tomogui.gui.ProjectWidget module

class tomogui.gui.ProjectWidget.ProjectWindow(parent=None, cfgFile=None)

Bases: PyQt5.QtWidgets.QMainWindow

This is the main window to deal with a freeART reconsparam

Parameters

parent – the parent of the widget in the Qt hierarchy

clean()

setConfFile(cfgFile)

filterOtherThan(id)

set the widget on for the given reconsparam type.

Parameters

id –

Returns

setReconsFluoMode(opt)

Set the reconsparam from fluo to be made from albsorption files directly or from I0 and It

Parameters

opt – the reconsparam we want. Should be in QDataSourceFluoWidget.RECONS_MODE

Returns

setSinoToRecons(reconsType, sinograms, names)

setIt(it, name=None)

setI0(i0, name=None)

setLogRecons(isLogRecons)

Set reconstruction mode for transmission reconstruction

class tomogui.gui.ProjectWidget.MainWidget(parent=None, statusBar=None)

Bases: PyQt5.QtWidgets.QWidget

This is the main widget for a freeART reconsparam.

Parameters

parent – the parent of the widget in the Qt hierarchy

clean()

setSinoToRecons(reconsType, sinogramsData, names=None)

Set the GUI to run the reconstruction of the given sinograms in the given mode.

Note

for Tx and FBP reconstruction we can now only deal with one reconstruction. Multiple sinogram reconstruction is only managed for fluorescence and compton.

Parameters

• reconsType (str) – the type of reconstruction to run

• sinogramsData (list) – list of numpy arrays to reconstruct. Numpy nd arrays should be 2D.

• names – list of the names of the sinograms

setIt(it, name=None)

setI0(i0, name=None)

setLogRecons(isLog)

getReconsParamWidget()

getNormalizationWidget()

getDataSourceWidget()

getMaterialsWidget()

saveConfiguration(filePath, merge)

Save the current configuration to the given file paths

getConfiguration(configFile)

Save the current configuration to the required configFile

setReconstructionType(reconsType)

loadConfigurationFromFile(filePath)

Update the widget fron a configuraton file :param filePath: The path of the configuration file.

Warning: This must be a ‘.cfg’ file

loadConfiguration(config)

getReconstructionType()