Actual source code: ex12.c
petsc-3.15.0 2021-03-30
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      1: static char help[] = "Poisson Problem in 2d and 3d with simplicial finite elements.\n\
      2: We solve the Poisson problem in a rectangular\n\
      3: domain, using a parallel unstructured mesh (DMPLEX) to discretize it.\n\
      4: This example supports discretized auxiliary fields (conductivity) as well as\n\
      5: multilevel nonlinear solvers.\n\n\n";

      7: /*
      8: A visualization of the adaptation can be accomplished using:

     10:   -dm_adapt_view hdf5:$PWD/adapt.h5 -sol_adapt_view hdf5:$PWD/adapt.h5::append -dm_adapt_pre_view hdf5:$PWD/orig.h5 -sol_adapt_pre_view hdf5:$PWD/orig.h5::append

     12: Information on refinement:

     14:    -info :~sys,vec,is,mat,ksp,snes,ts
     15: */

     17: #include <petscdmplex.h>
     18: #include <petscdmadaptor.h>
     19: #include <petscsnes.h>
     20: #include <petscds.h>
     21: #include <petscviewerhdf5.h>

     23: typedef enum {NEUMANN, DIRICHLET, NONE} BCType;
     24: typedef enum {RUN_FULL, RUN_EXACT, RUN_TEST, RUN_PERF} RunType;
     25: typedef enum {COEFF_NONE, COEFF_ANALYTIC, COEFF_FIELD, COEFF_NONLINEAR, COEFF_CIRCLE, COEFF_CROSS, COEFF_CHECKERBOARD_0, COEFF_CHECKERBOARD_1} CoeffType;

     27: typedef struct {
     28:   PetscInt       debug;             /* The debugging level */
     29:   RunType        runType;           /* Whether to run tests, or solve the full problem */
     30:   PetscBool      jacobianMF;        /* Whether to calculate the Jacobian action on the fly */
     31:   PetscLogEvent  createMeshEvent;
     32:   PetscBool      showInitial, showSolution, restart, quiet, nonzInit;
     33:   /* Domain and mesh definition */
     34:   PetscInt       dim;               /* The topological mesh dimension */
     35:   DMBoundaryType periodicity[3];    /* The domain periodicity */
     36:   PetscInt       cells[3];          /* The initial domain division */
     37:   char           filename[2048];    /* The optional mesh file */
     38:   PetscBool      interpolate;       /* Generate intermediate mesh elements */
     39:   PetscReal      refinementLimit;   /* The largest allowable cell volume */
     40:   PetscBool      viewHierarchy;     /* Whether to view the hierarchy */
     41:   PetscBool      simplex;           /* Simplicial mesh */
     42:   /* Problem definition */
     43:   BCType         bcType;
     44:   CoeffType      variableCoefficient;
     45:   PetscErrorCode (**exactFuncs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx);
     46:   PetscBool      fieldBC;
     47:   void           (**exactFields)(PetscInt, PetscInt, PetscInt,
     48:                                  const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
     49:                                  const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
     50:                                  PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
     51:   PetscBool      bdIntegral;        /* Compute the integral of the solution on the boundary */
     52:   /* Reproducing tests from SISC 40(3), pp. A1473-A1493, 2018 */
     53:   PetscInt       div;               /* Number of divisions */
     54:   PetscInt       k;                 /* Parameter for checkerboard coefficient */
     55:   PetscInt      *kgrid;             /* Random parameter grid */
     56:   /* Solver */
     57:   PC             pcmg;              /* This is needed for error monitoring */
     58:   PetscBool      checkksp;          /* Whether to check the KSPSolve for runType == RUN_TEST */
     59: } AppCtx;

     61: static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
     62: {
     63:   u[0] = 0.0;
     64:   return 0;
     65: }

     67: static PetscErrorCode ecks(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
     68: {
     69:   u[0] = x[0];
     70:   return 0;
     71: }

     73: /*
     74:   In 2D for Dirichlet conditions, we use exact solution:

     76:     u = x^2 + y^2
     77:     f = 4

     79:   so that

     81:     -\Delta u + f = -4 + 4 = 0

     83:   For Neumann conditions, we have

     85:     -\nabla u \cdot -\hat y |_{y=0} =  (2y)|_{y=0} =  0 (bottom)
     86:     -\nabla u \cdot  \hat y |_{y=1} = -(2y)|_{y=1} = -2 (top)
     87:     -\nabla u \cdot -\hat x |_{x=0} =  (2x)|_{x=0} =  0 (left)
     88:     -\nabla u \cdot  \hat x |_{x=1} = -(2x)|_{x=1} = -2 (right)

     90:   Which we can express as

     92:     \nabla u \cdot  \hat n|_\Gamma = {2 x, 2 y} \cdot \hat n = 2 (x + y)

     94:   The boundary integral of this solution is (assuming we are not orienting the edges)

     96:     \int^1_0 x^2 dx + \int^1_0 (1 + y^2) dy + \int^1_0 (x^2 + 1) dx + \int^1_0 y^2 dy = 1/3 + 4/3 + 4/3 + 1/3 = 3 1/3
     97: */
     98: static PetscErrorCode quadratic_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
     99: {
    100:   *u = x[0]*x[0] + x[1]*x[1];
    101:   return 0;
    102: }

    104: static void quadratic_u_field_2d(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    105:                                  const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    106:                                  const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    107:                                  PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar uexact[])
    108: {
    109:   uexact[0] = a[0];
    110: }

    112: static PetscErrorCode circle_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
    113: {
    114:   const PetscReal alpha   = 500.;
    115:   const PetscReal radius2 = PetscSqr(0.15);
    116:   const PetscReal r2      = PetscSqr(x[0] - 0.5) + PetscSqr(x[1] - 0.5);
    117:   const PetscReal xi      = alpha*(radius2 - r2);

    119:   *u = PetscTanhScalar(xi) + 1.0;
    120:   return 0;
    121: }

    123: static PetscErrorCode cross_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
    124: {
    125:   const PetscReal alpha = 50*4;
    126:   const PetscReal xy    = (x[0]-0.5)*(x[1]-0.5);

    128:   *u = PetscSinReal(alpha*xy) * (alpha*PetscAbsReal(xy) < 2*PETSC_PI ? 1 : 0.01);
    129:   return 0;
    130: }

    132: static void f0_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    133:                  const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    134:                  const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    135:                  PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
    136: {
    137:   f0[0] = 4.0;
    138: }

    140: static void f0_circle_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    141:                         const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    142:                         const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    143:                         PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
    144: {
    145:   const PetscReal alpha   = 500.;
    146:   const PetscReal radius2 = PetscSqr(0.15);
    147:   const PetscReal r2      = PetscSqr(x[0] - 0.5) + PetscSqr(x[1] - 0.5);
    148:   const PetscReal xi      = alpha*(radius2 - r2);

    150:   f0[0] = (-4.0*alpha - 8.0*PetscSqr(alpha)*r2*PetscTanhReal(xi)) * PetscSqr(1.0/PetscCoshReal(xi));
    151: }

    153: static void f0_cross_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    154:                        const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    155:                        const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    156:                        PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
    157: {
    158:   const PetscReal alpha = 50*4;
    159:   const PetscReal xy    = (x[0]-0.5)*(x[1]-0.5);

    161:   f0[0] = PetscSinReal(alpha*xy) * (alpha*PetscAbsReal(xy) < 2*PETSC_PI ? 1 : 0.01);
    162: }

    164: static void f0_checkerboard_0_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    165:                                 const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    166:                                 const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    167:                                 PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
    168: {
    169:   f0[0] = -20.0*PetscExpReal(-(PetscSqr(x[0] - 0.5) + PetscSqr(x[1] - 0.5)));
    170: }

    172: static void f0_bd_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    173:                     const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    174:                     const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    175:                     PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
    176: {
    177:   PetscInt d;
    178:   for (d = 0, f0[0] = 0.0; d < dim; ++d) f0[0] += -n[d]*2.0*x[d];
    179: }

    181: static void f1_bd_zero(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    182:                        const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    183:                        const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    184:                        PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
    185: {
    186:   PetscInt comp;
    187:   for (comp = 0; comp < dim; ++comp) f1[comp] = 0.0;
    188: }

    190: /* gradU[comp*dim+d] = {u_x, u_y} or {u_x, u_y, u_z} */
    191: static void f1_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    192:                  const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    193:                  const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    194:                  PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
    195: {
    196:   PetscInt d;
    197:   for (d = 0; d < dim; ++d) f1[d] = u_x[d];
    198: }

    200: /* < \nabla v, \nabla u + {\nabla u}^T >
    201:    This just gives \nabla u, give the perdiagonal for the transpose */
    202: static void g3_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    203:                   const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    204:                   const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    205:                   PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[])
    206: {
    207:   PetscInt d;
    208:   for (d = 0; d < dim; ++d) g3[d*dim+d] = 1.0;
    209: }

    211: /*
    212:   In 2D for x periodicity and y Dirichlet conditions, we use exact solution:

    214:     u = sin(2 pi x)
    215:     f = -4 pi^2 sin(2 pi x)

    217:   so that

    219:     -\Delta u + f = 4 pi^2 sin(2 pi x) - 4 pi^2 sin(2 pi x) = 0
    220: */
    221: static PetscErrorCode xtrig_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
    222: {
    223:   *u = PetscSinReal(2.0*PETSC_PI*x[0]);
    224:   return 0;
    225: }

    227: static void f0_xtrig_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    228:                        const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    229:                        const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    230:                        PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
    231: {
    232:   f0[0] = -4.0*PetscSqr(PETSC_PI)*PetscSinReal(2.0*PETSC_PI*x[0]);
    233: }

    235: /*
    236:   In 2D for x-y periodicity, we use exact solution:

    238:     u = sin(2 pi x) sin(2 pi y)
    239:     f = -8 pi^2 sin(2 pi x)

    241:   so that

    243:     -\Delta u + f = 4 pi^2 sin(2 pi x) sin(2 pi y) + 4 pi^2 sin(2 pi x) sin(2 pi y) - 8 pi^2 sin(2 pi x) = 0
    244: */
    245: static PetscErrorCode xytrig_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
    246: {
    247:   *u = PetscSinReal(2.0*PETSC_PI*x[0])*PetscSinReal(2.0*PETSC_PI*x[1]);
    248:   return 0;
    249: }

    251: static void f0_xytrig_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    252:                         const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    253:                         const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    254:                         PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
    255: {
    256:   f0[0] = -8.0*PetscSqr(PETSC_PI)*PetscSinReal(2.0*PETSC_PI*x[0]);
    257: }

    259: /*
    260:   In 2D for Dirichlet conditions with a variable coefficient, we use exact solution:

    262:     u  = x^2 + y^2
    263:     f  = 6 (x + y)
    264:     nu = (x + y)

    266:   so that

    268:     -\div \nu \grad u + f = -6 (x + y) + 6 (x + y) = 0
    269: */
    270: static PetscErrorCode nu_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
    271: {
    272:   *u = x[0] + x[1];
    273:   return 0;
    274: }

    276: static PetscErrorCode checkerboardCoeff(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
    277: {
    278:   AppCtx  *user = (AppCtx *) ctx;
    279:   PetscInt div  = user->div;
    280:   PetscInt k    = user->k;
    281:   PetscInt mask = 0, ind = 0, d;

    284:   for (d = 0; d < dim; ++d) mask = (mask + (PetscInt) (x[d]*div)) % 2;
    285:   if (user->kgrid) {
    286:     for (d = 0; d < dim; ++d) {
    287:       if (d > 0) ind *= dim;
    288:       ind += (PetscInt) (x[d]*div);
    289:     }
    290:     k = user->kgrid[ind];
    291:   }
    292:   u[0] = mask ? 1.0 : PetscPowRealInt(10.0, -k);
    293:   return(0);
    294: }

    296: void f0_analytic_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    297:                    const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    298:                    const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    299:                    PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
    300: {
    301:   f0[0] = 6.0*(x[0] + x[1]);
    302: }

    304: /* gradU[comp*dim+d] = {u_x, u_y} or {u_x, u_y, u_z} */
    305: void f1_analytic_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    306:                    const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    307:                    const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    308:                    PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
    309: {
    310:   PetscInt d;
    311:   for (d = 0; d < dim; ++d) f1[d] = (x[0] + x[1])*u_x[d];
    312: }

    314: void f1_field_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    315:                 const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    316:                 const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    317:                 PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
    318: {
    319:   PetscInt d;
    320:   for (d = 0; d < dim; ++d) f1[d] = a[0]*u_x[d];
    321: }

    323: /* < \nabla v, \nabla u + {\nabla u}^T >
    324:    This just gives \nabla u, give the perdiagonal for the transpose */
    325: void g3_analytic_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    326:                     const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    327:                     const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    328:                     PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[])
    329: {
    330:   PetscInt d;
    331:   for (d = 0; d < dim; ++d) g3[d*dim+d] = x[0] + x[1];
    332: }

    334: void g3_field_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    335:                  const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    336:                  const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    337:                  PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[])
    338: {
    339:   PetscInt d;
    340:   for (d = 0; d < dim; ++d) g3[d*dim+d] = a[0];
    341: }

    343: /*
    344:   In 2D for Dirichlet conditions with a nonlinear coefficient (p-Laplacian with p = 4), we use exact solution:

    346:     u  = x^2 + y^2
    347:     f  = 16 (x^2 + y^2)
    348:     nu = 1/2 |grad u|^2

    350:   so that

    352:     -\div \nu \grad u + f = -16 (x^2 + y^2) + 16 (x^2 + y^2) = 0
    353: */
    354: void f0_analytic_nonlinear_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    355:                              const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    356:                              const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    357:                              PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
    358: {
    359:   f0[0] = 16.0*(x[0]*x[0] + x[1]*x[1]);
    360: }

    362: /* gradU[comp*dim+d] = {u_x, u_y} or {u_x, u_y, u_z} */
    363: void f1_analytic_nonlinear_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    364:                              const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    365:                              const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    366:                              PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
    367: {
    368:   PetscScalar nu = 0.0;
    369:   PetscInt    d;
    370:   for (d = 0; d < dim; ++d) nu += u_x[d]*u_x[d];
    371:   for (d = 0; d < dim; ++d) f1[d] = 0.5*nu*u_x[d];
    372: }

    374: /*
    375:   grad (u + eps w) - grad u = eps grad w

    377:   1/2 |grad (u + eps w)|^2 grad (u + eps w) - 1/2 |grad u|^2 grad u
    378: = 1/2 (|grad u|^2 + 2 eps <grad u,grad w>) (grad u + eps grad w) - 1/2 |grad u|^2 grad u
    379: = 1/2 (eps |grad u|^2 grad w + 2 eps <grad u,grad w> grad u)
    380: = eps (1/2 |grad u|^2 grad w + grad u <grad u,grad w>)
    381: */
    382: void g3_analytic_nonlinear_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    383:                               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    384:                               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    385:                               PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[])
    386: {
    387:   PetscScalar nu = 0.0;
    388:   PetscInt    d, e;
    389:   for (d = 0; d < dim; ++d) nu += u_x[d]*u_x[d];
    390:   for (d = 0; d < dim; ++d) {
    391:     g3[d*dim+d] = 0.5*nu;
    392:     for (e = 0; e < dim; ++e) {
    393:       g3[d*dim+e] += u_x[d]*u_x[e];
    394:     }
    395:   }
    396: }

    398: /*
    399:   In 3D for Dirichlet conditions we use exact solution:

    401:     u = 2/3 (x^2 + y^2 + z^2)
    402:     f = 4

    404:   so that

    406:     -\Delta u + f = -2/3 * 6 + 4 = 0

    408:   For Neumann conditions, we have

    410:     -\nabla u \cdot -\hat z |_{z=0} =  (2z)|_{z=0} =  0 (bottom)
    411:     -\nabla u \cdot  \hat z |_{z=1} = -(2z)|_{z=1} = -2 (top)
    412:     -\nabla u \cdot -\hat y |_{y=0} =  (2y)|_{y=0} =  0 (front)
    413:     -\nabla u \cdot  \hat y |_{y=1} = -(2y)|_{y=1} = -2 (back)
    414:     -\nabla u \cdot -\hat x |_{x=0} =  (2x)|_{x=0} =  0 (left)
    415:     -\nabla u \cdot  \hat x |_{x=1} = -(2x)|_{x=1} = -2 (right)

    417:   Which we can express as

    419:     \nabla u \cdot  \hat n|_\Gamma = {2 x, 2 y, 2z} \cdot \hat n = 2 (x + y + z)
    420: */
    421: static PetscErrorCode quadratic_u_3d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
    422: {
    423:   *u = 2.0*(x[0]*x[0] + x[1]*x[1] + x[2]*x[2])/3.0;
    424:   return 0;
    425: }

    427: static void quadratic_u_field_3d(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    428:                                  const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    429:                                  const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    430:                                  PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar uexact[])
    431: {
    432:   uexact[0] = a[0];
    433: }

    435: static void bd_integral_2d(PetscInt dim, PetscInt Nf, PetscInt NfAux,
    436:                            const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
    437:                            const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
    438:                            PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar *uint)
    439: {
    440:   uint[0] = u[0];
    441: }

    443: static PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options)
    444: {
    445:   const char    *bcTypes[3]  = {"neumann", "dirichlet", "none"};
    446:   const char    *runTypes[4] = {"full", "exact", "test", "perf"};
    447:   const char    *coeffTypes[8] = {"none", "analytic", "field", "nonlinear", "circle", "cross", "checkerboard_0", "checkerboard_1"};
    448:   PetscInt       bd, bc, run, coeff, n;
    449:   PetscBool      rand = PETSC_FALSE, flg;

    453:   options->debug               = 0;
    454:   options->runType             = RUN_FULL;
    455:   options->dim                 = 2;
    456:   options->periodicity[0]      = DM_BOUNDARY_NONE;
    457:   options->periodicity[1]      = DM_BOUNDARY_NONE;
    458:   options->periodicity[2]      = DM_BOUNDARY_NONE;
    459:   options->cells[0]            = 2;
    460:   options->cells[1]            = 2;
    461:   options->cells[2]            = 2;
    462:   options->filename[0]         = '\0';
    463:   options->interpolate         = PETSC_TRUE;
    464:   options->refinementLimit     = 0.0;
    465:   options->bcType              = DIRICHLET;
    466:   options->variableCoefficient = COEFF_NONE;
    467:   options->fieldBC             = PETSC_FALSE;
    468:   options->jacobianMF          = PETSC_FALSE;
    469:   options->showInitial         = PETSC_FALSE;
    470:   options->showSolution        = PETSC_FALSE;
    471:   options->restart             = PETSC_FALSE;
    472:   options->viewHierarchy       = PETSC_FALSE;
    473:   options->simplex             = PETSC_TRUE;
    474:   options->quiet               = PETSC_FALSE;
    475:   options->nonzInit            = PETSC_FALSE;
    476:   options->bdIntegral          = PETSC_FALSE;
    477:   options->checkksp            = PETSC_FALSE;
    478:   options->div                 = 4;
    479:   options->k                   = 1;
    480:   options->kgrid               = NULL;

    482:   PetscOptionsBegin(comm, "", "Poisson Problem Options", "DMPLEX");
    483:   PetscOptionsInt("-debug", "The debugging level", "ex12.c", options->debug, &options->debug, NULL);
    484:   run  = options->runType;
    485:   PetscOptionsEList("-run_type", "The run type", "ex12.c", runTypes, 4, runTypes[options->runType], &run, NULL);

    487:   options->runType = (RunType) run;

    489:   PetscOptionsInt("-dim", "The topological mesh dimension", "ex12.c", options->dim, &options->dim, NULL);
    490:   bd = options->periodicity[0];
    491:   PetscOptionsEList("-x_periodicity", "The x-boundary periodicity", "ex12.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[0]], &bd, NULL);
    492:   options->periodicity[0] = (DMBoundaryType) bd;
    493:   bd = options->periodicity[1];
    494:   PetscOptionsEList("-y_periodicity", "The y-boundary periodicity", "ex12.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[1]], &bd, NULL);
    495:   options->periodicity[1] = (DMBoundaryType) bd;
    496:   bd = options->periodicity[2];
    497:   PetscOptionsEList("-z_periodicity", "The z-boundary periodicity", "ex12.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[2]], &bd, NULL);
    498:   options->periodicity[2] = (DMBoundaryType) bd;
    499:   n = 3;
    500:   PetscOptionsIntArray("-cells", "The initial mesh division", "ex12.c", options->cells, &n, NULL);
    501:   PetscOptionsString("-f", "Mesh filename to read", "ex12.c", options->filename, options->filename, sizeof(options->filename), &flg);
    502:   PetscOptionsBool("-interpolate", "Generate intermediate mesh elements", "ex12.c", options->interpolate, &options->interpolate, NULL);
    503:   PetscOptionsReal("-refinement_limit", "The largest allowable cell volume", "ex12.c", options->refinementLimit, &options->refinementLimit, NULL);
    504:   bc   = options->bcType;
    505:   PetscOptionsEList("-bc_type","Type of boundary condition","ex12.c",bcTypes,3,bcTypes[options->bcType],&bc,NULL);
    506:   options->bcType = (BCType) bc;
    507:   coeff = options->variableCoefficient;
    508:   PetscOptionsEList("-variable_coefficient","Type of variable coefficent","ex12.c",coeffTypes,8,coeffTypes[options->variableCoefficient],&coeff,NULL);
    509:   options->variableCoefficient = (CoeffType) coeff;

    511:   PetscOptionsBool("-field_bc", "Use a field representation for the BC", "ex12.c", options->fieldBC, &options->fieldBC, NULL);
    512:   PetscOptionsBool("-jacobian_mf", "Calculate the action of the Jacobian on the fly", "ex12.c", options->jacobianMF, &options->jacobianMF, NULL);
    513:   PetscOptionsBool("-show_initial", "Output the initial guess for verification", "ex12.c", options->showInitial, &options->showInitial, NULL);
    514:   PetscOptionsBool("-show_solution", "Output the solution for verification", "ex12.c", options->showSolution, &options->showSolution, NULL);
    515:   PetscOptionsBool("-restart", "Read in the mesh and solution from a file", "ex12.c", options->restart, &options->restart, NULL);
    516:   PetscOptionsBool("-dm_view_hierarchy", "View the coarsened hierarchy", "ex12.c", options->viewHierarchy, &options->viewHierarchy, NULL);
    517:   PetscOptionsBool("-simplex", "Simplicial (true) or tensor (false) mesh", "ex12.c", options->simplex, &options->simplex, NULL);
    518:   PetscOptionsBool("-quiet", "Don't print any vecs", "ex12.c", options->quiet, &options->quiet, NULL);
    519:   PetscOptionsBool("-nonzero_initial_guess", "nonzero initial guess", "ex12.c", options->nonzInit, &options->nonzInit, NULL);
    520:   PetscOptionsBool("-bd_integral", "Compute the integral of the solution on the boundary", "ex12.c", options->bdIntegral, &options->bdIntegral, NULL);
    521:   if (options->runType == RUN_TEST) {
    522:     PetscOptionsBool("-run_test_check_ksp", "Check solution of KSP", "ex12.c", options->checkksp, &options->checkksp, NULL);
    523:   }
    524:   PetscOptionsInt("-div", "The number of division for the checkerboard coefficient", "ex12.c", options->div, &options->div, NULL);
    525:   PetscOptionsInt("-k", "The exponent for the checkerboard coefficient", "ex12.c", options->k, &options->k, NULL);
    526:   PetscOptionsBool("-k_random", "Assign random k values to checkerboard", "ex12.c", rand, &rand, NULL);
    527:   PetscOptionsEnd();
    528:   PetscLogEventRegister("CreateMesh", DM_CLASSID, &options->createMeshEvent);

    530:   if (rand) {
    531:     PetscRandom r;
    532:     PetscReal   val;
    533:     PetscInt    N = PetscPowInt(options->div, options->dim), i;

    535:     PetscMalloc1(N, &options->kgrid);
    536:     PetscRandomCreate(PETSC_COMM_SELF, &r);
    537:     PetscRandomSetFromOptions(r);
    538:     PetscRandomSetInterval(r, 0.0, options->k);
    539:     PetscRandomSetSeed(r, 1973);
    540:     PetscRandomSeed(r);
    541:     for (i = 0; i < N; ++i) {
    542:       PetscRandomGetValueReal(r, &val);
    543:       options->kgrid[i] = 1 + (PetscInt) val;
    544:     }
    545:     PetscRandomDestroy(&r);
    546:   }
    547:   return(0);
    548: }

    550: static PetscErrorCode CreateBCLabel(DM dm, const char name[])
    551: {
    552:   DM             plex;
    553:   DMLabel        label;

    557:   DMCreateLabel(dm, name);
    558:   DMGetLabel(dm, name, &label);
    559:   DMConvert(dm, DMPLEX, &plex);
    560:   DMPlexMarkBoundaryFaces(plex, 1, label);
    561:   DMDestroy(&plex);
    562:   return(0);
    563: }

    565: static PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm)
    566: {
    567:   PetscInt       dim             = user->dim;
    568:   const char    *filename        = user->filename;
    569:   PetscBool      interpolate     = user->interpolate;
    570:   PetscReal      refinementLimit = user->refinementLimit;
    571:   size_t         len;

    575:   PetscLogEventBegin(user->createMeshEvent,0,0,0,0);
    576:   PetscStrlen(filename, &len);
    577:   if (!len) {
    578:     PetscInt d;

    580:     if (user->periodicity[0] || user->periodicity[1] || user->periodicity[2]) for (d = 0; d < dim; ++d) user->cells[d] = PetscMax(user->cells[d], 3);
    581:     DMPlexCreateBoxMesh(comm, dim, user->simplex, user->cells, NULL, NULL, user->periodicity, interpolate, dm);
    582:     PetscObjectSetName((PetscObject) *dm, "Mesh");
    583:   } else {
    584:     DMPlexCreateFromFile(comm, filename, interpolate, dm);
    585:     DMPlexSetRefinementUniform(*dm, PETSC_FALSE);
    586:   }
    587:   {
    588:     PetscPartitioner part;
    589:     DM               refinedMesh     = NULL;
    590:     DM               distributedMesh = NULL;

    592:     /* Refine mesh using a volume constraint */
    593:     if (refinementLimit > 0.0) {
    594:       DMPlexSetRefinementLimit(*dm, refinementLimit);
    595:       DMRefine(*dm, comm, &refinedMesh);
    596:       if (refinedMesh) {
    597:         const char *name;

    599:         PetscObjectGetName((PetscObject) *dm,         &name);
    600:         PetscObjectSetName((PetscObject) refinedMesh,  name);
    601:         DMDestroy(dm);
    602:         *dm  = refinedMesh;
    603:       }
    604:     }
    605:     /* Distribute mesh over processes */
    606:     DMPlexGetPartitioner(*dm,&part);
    607:     PetscPartitionerSetFromOptions(part);
    608:     DMPlexDistribute(*dm, 0, NULL, &distributedMesh);
    609:     if (distributedMesh) {
    610:       DMDestroy(dm);
    611:       *dm  = distributedMesh;
    612:     }
    613:   }
    614:   if (interpolate) {
    615:     if (user->bcType == NEUMANN) {
    616:       DMLabel   label;

    618:       DMCreateLabel(*dm, "boundary");
    619:       DMGetLabel(*dm, "boundary", &label);
    620:       DMPlexMarkBoundaryFaces(*dm, 1, label);
    621:     } else if (user->bcType == DIRICHLET) {
    622:       PetscBool hasLabel;

    624:       DMHasLabel(*dm,"marker",&hasLabel);
    625:       if (!hasLabel) {CreateBCLabel(*dm, "marker");}
    626:     }
    627:   }
    628:   {
    629:     char      convType[256];
    630:     PetscBool flg;

    632:     PetscOptionsBegin(comm, "", "Mesh conversion options", "DMPLEX");
    633:     PetscOptionsFList("-dm_plex_convert_type","Convert DMPlex to another format","ex12",DMList,DMPLEX,convType,256,&flg);
    634:     PetscOptionsEnd();
    635:     if (flg) {
    636:       DM dmConv;

    638:       DMConvert(*dm,convType,&dmConv);
    639:       if (dmConv) {
    640:         DMDestroy(dm);
    641:         *dm  = dmConv;
    642:       }
    643:     }
    644:   }
    645:   DMLocalizeCoordinates(*dm); /* needed for periodic */
    646:   DMSetFromOptions(*dm);
    647:   DMViewFromOptions(*dm, NULL, "-dm_view");
    648:   if (user->viewHierarchy) {
    649:     DM       cdm = *dm;
    650:     PetscInt i   = 0;
    651:     char     buf[256];

    653:     while (cdm) {
    654:       DMSetUp(cdm);
    655:       DMGetCoarseDM(cdm, &cdm);
    656:       ++i;
    657:     }
    658:     cdm = *dm;
    659:     while (cdm) {
    660:       PetscViewer       viewer;
    661:       PetscBool   isHDF5, isVTK;

    663:       --i;
    664:       PetscViewerCreate(comm,&viewer);
    665:       PetscViewerSetType(viewer,PETSCVIEWERHDF5);
    666:       PetscViewerSetOptionsPrefix(viewer,"hierarchy_");
    667:       PetscViewerSetFromOptions(viewer);
    668:       PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&isHDF5);
    669:       PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERVTK,&isVTK);
    670:       if (isHDF5) {
    671:         PetscSNPrintf(buf, 256, "ex12-%d.h5", i);
    672:       } else if (isVTK) {
    673:         PetscSNPrintf(buf, 256, "ex12-%d.vtu", i);
    674:         PetscViewerPushFormat(viewer,PETSC_VIEWER_VTK_VTU);
    675:       } else {
    676:         PetscSNPrintf(buf, 256, "ex12-%d", i);
    677:       }
    678:       PetscViewerFileSetMode(viewer,FILE_MODE_WRITE);
    679:       PetscViewerFileSetName(viewer,buf);
    680:       DMView(cdm, viewer);
    681:       PetscViewerDestroy(&viewer);
    682:       DMGetCoarseDM(cdm, &cdm);
    683:     }
    684:   }
    685:   PetscLogEventEnd(user->createMeshEvent,0,0,0,0);
    686:   return(0);
    687: }

    689: static PetscErrorCode SetupProblem(DM dm, AppCtx *user)
    690: {
    691:   PetscDS        prob;
    692:   const PetscInt id = 1;

    696:   DMGetDS(dm, &prob);
    697:   switch (user->variableCoefficient) {
    698:   case COEFF_NONE:
    699:     if (user->periodicity[0]) {
    700:       if (user->periodicity[1]) {
    701:         PetscDSSetResidual(prob, 0, f0_xytrig_u, f1_u);
    702:         PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);
    703:       } else {
    704:         PetscDSSetResidual(prob, 0, f0_xtrig_u,  f1_u);
    705:         PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);
    706:       }
    707:     } else {
    708:       PetscDSSetResidual(prob, 0, f0_u, f1_u);
    709:       PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);
    710:     }
    711:     break;
    712:   case COEFF_ANALYTIC:
    713:     PetscDSSetResidual(prob, 0, f0_analytic_u, f1_analytic_u);
    714:     PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_analytic_uu);
    715:     break;
    716:   case COEFF_FIELD:
    717:     PetscDSSetResidual(prob, 0, f0_analytic_u, f1_field_u);
    718:     PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_field_uu);
    719:     break;
    720:   case COEFF_NONLINEAR:
    721:     PetscDSSetResidual(prob, 0, f0_analytic_nonlinear_u, f1_analytic_nonlinear_u);
    722:     PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_analytic_nonlinear_uu);
    723:     break;
    724:   case COEFF_CIRCLE:
    725:     PetscDSSetResidual(prob, 0, f0_circle_u, f1_u);
    726:     PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);
    727:     break;
    728:   case COEFF_CROSS:
    729:     PetscDSSetResidual(prob, 0, f0_cross_u, f1_u);
    730:     PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);
    731:     break;
    732:   case COEFF_CHECKERBOARD_0:
    733:     PetscDSSetResidual(prob, 0, f0_checkerboard_0_u, f1_field_u);
    734:     PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_field_uu);
    735:     break;
    736:   default: SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid variable coefficient type %d", user->variableCoefficient);
    737:   }
    738:   switch (user->dim) {
    739:   case 2:
    740:     switch (user->variableCoefficient) {
    741:     case COEFF_CIRCLE:
    742:       user->exactFuncs[0]  = circle_u_2d;break;
    743:     case COEFF_CROSS:
    744:       user->exactFuncs[0]  = cross_u_2d;break;
    745:     case COEFF_CHECKERBOARD_0:
    746:       user->exactFuncs[0]  = zero;break;
    747:     default:
    748:       if (user->periodicity[0]) {
    749:         if (user->periodicity[1]) {
    750:           user->exactFuncs[0] = xytrig_u_2d;
    751:         } else {
    752:           user->exactFuncs[0] = xtrig_u_2d;
    753:         }
    754:       } else {
    755:         user->exactFuncs[0]  = quadratic_u_2d;
    756:         user->exactFields[0] = quadratic_u_field_2d;
    757:       }
    758:     }
    759:     if (user->bcType == NEUMANN) {PetscDSSetBdResidual(prob, 0, f0_bd_u, f1_bd_zero);}
    760:     break;
    761:   case 3:
    762:     user->exactFuncs[0]  = quadratic_u_3d;
    763:     user->exactFields[0] = quadratic_u_field_3d;
    764:     if (user->bcType == NEUMANN) {PetscDSSetBdResidual(prob, 0, f0_bd_u, f1_bd_zero);}
    765:     break;
    766:   default:
    767:     SETERRQ1(PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %d", user->dim);
    768:   }
    769:   /* Setup constants */
    770:   switch (user->variableCoefficient) {
    771:   case COEFF_CHECKERBOARD_0:
    772:   {
    773:     PetscScalar constants[2];

    775:     constants[0] = user->div;
    776:     constants[1] = user->k;
    777:     PetscDSSetConstants(prob, 2, constants);
    778:   }
    779:   break;
    780:   default: break;
    781:   }
    782:   PetscDSSetExactSolution(prob, 0, user->exactFuncs[0], user);
    783:   /* Setup Boundary Conditions */
    784:   if (user->bcType != NONE) {
    785:     DMAddBoundary(dm, user->bcType == DIRICHLET ? (user->fieldBC ? DM_BC_ESSENTIAL_FIELD : DM_BC_ESSENTIAL) : DM_BC_NATURAL,
    786:                          "wall", user->bcType == DIRICHLET ? "marker" : "boundary", 0, 0, NULL,
    787:                          user->fieldBC ? (void (*)(void)) user->exactFields[0] : (void (*)(void)) user->exactFuncs[0], NULL, 1, &id, user);
    788:   }
    789:   return(0);
    790: }

    792: static PetscErrorCode SetupMaterial(DM dm, DM dmAux, AppCtx *user)
    793: {
    794:   PetscErrorCode (*matFuncs[1])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx) = {nu_2d};
    795:   void            *ctx[1];
    796:   Vec              nu;
    797:   PetscErrorCode   ierr;

    800:   ctx[0] = user;
    801:   if (user->variableCoefficient == COEFF_CHECKERBOARD_0) {matFuncs[0] = checkerboardCoeff;}
    802:   DMCreateLocalVector(dmAux, &nu);
    803:   PetscObjectSetName((PetscObject) nu, "Coefficient");
    804:   DMProjectFunctionLocal(dmAux, 0.0, matFuncs, ctx, INSERT_ALL_VALUES, nu);
    805:   PetscObjectCompose((PetscObject) dm, "A", (PetscObject) nu);
    806:   VecDestroy(&nu);
    807:   return(0);
    808: }

    810: static PetscErrorCode SetupBC(DM dm, DM dmAux, AppCtx *user)
    811: {
    812:   PetscErrorCode (*bcFuncs[1])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx);
    813:   Vec            uexact;
    814:   PetscInt       dim;

    818:   DMGetDimension(dm, &dim);
    819:   if (dim == 2) bcFuncs[0] = quadratic_u_2d;
    820:   else          bcFuncs[0] = quadratic_u_3d;
    821:   DMCreateLocalVector(dmAux, &uexact);
    822:   DMProjectFunctionLocal(dmAux, 0.0, bcFuncs, NULL, INSERT_ALL_VALUES, uexact);
    823:   PetscObjectCompose((PetscObject) dm, "A", (PetscObject) uexact);
    824:   VecDestroy(&uexact);
    825:   return(0);
    826: }

    828: static PetscErrorCode SetupAuxDM(DM dm, PetscFE feAux, AppCtx *user)
    829: {
    830:   DM             dmAux, coordDM;

    834:   /* MUST call DMGetCoordinateDM() in order to get p4est setup if present */
    835:   DMGetCoordinateDM(dm, &coordDM);
    836:   if (!feAux) return(0);
    837:   DMClone(dm, &dmAux);
    838:   PetscObjectCompose((PetscObject) dm, "dmAux", (PetscObject) dmAux);
    839:   DMSetCoordinateDM(dmAux, coordDM);
    840:   DMSetField(dmAux, 0, NULL, (PetscObject) feAux);
    841:   DMCreateDS(dmAux);
    842:   if (user->fieldBC) {SetupBC(dm, dmAux, user);}
    843:   else               {SetupMaterial(dm, dmAux, user);}
    844:   DMDestroy(&dmAux);
    845:   return(0);
    846: }

    848: static PetscErrorCode SetupDiscretization(DM dm, AppCtx *user)
    849: {
    850:   DM             cdm = dm;
    851:   const PetscInt dim = user->dim;
    852:   PetscFE        fe, feAux = NULL;
    853:   PetscBool      simplex   = user->simplex;
    854:   MPI_Comm       comm;

    858:   /* Create finite element for each field and auxiliary field */
    859:   PetscObjectGetComm((PetscObject) dm, &comm);
    860:   PetscFECreateDefault(comm, dim, 1, simplex, NULL, -1, &fe);
    861:   PetscObjectSetName((PetscObject) fe, "potential");
    862:   if (user->variableCoefficient == COEFF_FIELD || user->variableCoefficient == COEFF_CHECKERBOARD_0) {
    863:     PetscFECreateDefault(comm, dim, 1, simplex, "mat_", -1, &feAux);
    864:     PetscObjectSetName((PetscObject) feAux, "coefficient");
    865:     PetscFECopyQuadrature(fe, feAux);
    866:   } else if (user->fieldBC) {
    867:     PetscFECreateDefault(comm, dim, 1, simplex, "bc_", -1, &feAux);
    868:     PetscFECopyQuadrature(fe, feAux);
    869:   }
    870:   /* Set discretization and boundary conditions for each mesh */
    871:   DMSetField(dm, 0, NULL, (PetscObject) fe);
    872:   DMCreateDS(dm);
    873:   SetupProblem(dm, user);
    874:   while (cdm) {
    875:     SetupAuxDM(cdm, feAux, user);
    876:     if (user->bcType == DIRICHLET && user->interpolate) {
    877:       PetscBool hasLabel;

    879:       DMHasLabel(cdm, "marker", &hasLabel);
    880:       if (!hasLabel) {CreateBCLabel(cdm, "marker");}
    881:     }
    882:     DMCopyDisc(dm, cdm);
    883:     DMGetCoarseDM(cdm, &cdm);
    884:   }
    885:   PetscFEDestroy(&fe);
    886:   PetscFEDestroy(&feAux);
    887:   return(0);
    888: }

    890: #include "petsc/private/petscimpl.h"

    892: /*
    893:   MonitorError - Outputs the error at each iteration of an iterative solver.

    895:   Collective on KSP

    897:   Input Parameters:
    898: + ksp   - the KSP
    899: . its   - iteration number
    900: . rnorm - 2-norm, preconditioned residual value (may be estimated).
    901: - ctx   - monitor context

    903:   Level: intermediate

    905: .seealso: KSPMonitorSet(), KSPMonitorTrueResidual(), KSPMonitorResidual()
    906: */
    907: static PetscErrorCode MonitorError(KSP ksp, PetscInt its, PetscReal rnorm, void *ctx)
    908: {
    909:   AppCtx        *user = (AppCtx *) ctx;
    910:   DM             dm;
    911:   Vec            du = NULL, r;
    912:   PetscInt       level = 0;
    913:   PetscBool      hasLevel;
    914: #if defined(PETSC_HAVE_HDF5)
    915:   PetscViewer    viewer;
    916:   char           buf[256];
    917: #endif

    921:   KSPGetDM(ksp, &dm);
    922:   /* Calculate solution */
    923:   {
    924:     PC        pc = user->pcmg; /* The MG PC */
    925:     DM        fdm = NULL,  cdm = NULL;
    926:     KSP       fksp, cksp;
    927:     Vec       fu,   cu = NULL;
    928:     PetscInt  levels, l;

    930:     KSPBuildSolution(ksp, NULL, &du);
    931:     PetscObjectComposedDataGetInt((PetscObject) ksp, PetscMGLevelId, level, hasLevel);
    932:     PCMGGetLevels(pc, &levels);
    933:     PCMGGetSmoother(pc, levels-1, &fksp);
    934:     KSPBuildSolution(fksp, NULL, &fu);
    935:     for (l = levels-1; l > level; --l) {
    936:       Mat R;
    937:       Vec s;

    939:       PCMGGetSmoother(pc, l-1, &cksp);
    940:       KSPGetDM(cksp, &cdm);
    941:       DMGetGlobalVector(cdm, &cu);
    942:       PCMGGetRestriction(pc, l, &R);
    943:       PCMGGetRScale(pc, l, &s);
    944:       MatRestrict(R, fu, cu);
    945:       VecPointwiseMult(cu, cu, s);
    946:       if (l < levels-1) {DMRestoreGlobalVector(fdm, &fu);}
    947:       fdm  = cdm;
    948:       fu   = cu;
    949:     }
    950:     if (levels-1 > level) {
    951:       VecAXPY(du, 1.0, cu);
    952:       DMRestoreGlobalVector(cdm, &cu);
    953:     }
    954:   }
    955:   /* Calculate error */
    956:   DMGetGlobalVector(dm, &r);
    957:   DMProjectFunction(dm, 0.0, user->exactFuncs, NULL, INSERT_ALL_VALUES, r);
    958:   VecAXPY(r,-1.0,du);
    959:   PetscObjectSetName((PetscObject) r, "solution error");
    960:   /* View error */
    961: #if defined(PETSC_HAVE_HDF5)
    962:   PetscSNPrintf(buf, 256, "ex12-%D.h5", level);
    963:   PetscViewerHDF5Open(PETSC_COMM_WORLD, buf, FILE_MODE_APPEND, &viewer);
    964:   VecView(r, viewer);
    965:   PetscViewerDestroy(&viewer);
    966: #endif
    967:   DMRestoreGlobalVector(dm, &r);
    968:   return(0);
    969: }

    971: /*@C
    972:   SNESMonitorError - Outputs the error at each iteration of an iterative solver.

    974:   Collective on SNES

    976:   Input Parameters:
    977: + snes  - the SNES
    978: . its   - iteration number
    979: . rnorm - 2-norm of residual
    980: - ctx   - user context

    982:   Level: intermediate

    984: .seealso: SNESMonitorDefault(), SNESMonitorSet(), SNESMonitorSolution()
    985: @*/
    986: static PetscErrorCode SNESMonitorError(SNES snes, PetscInt its, PetscReal rnorm, void *ctx)
    987: {
    988:   AppCtx        *user = (AppCtx *) ctx;
    989:   DM             dm;
    990:   Vec            u, r;
    991:   PetscInt       level = -1;
    992:   PetscBool      hasLevel;
    993: #if defined(PETSC_HAVE_HDF5)
    994:   PetscViewer    viewer;
    995: #endif
    996:   char           buf[256];

    1000:   SNESGetDM(snes, &dm);
    1001:   /* Calculate error */
    1002:   SNESGetSolution(snes, &u);
    1003:   DMGetGlobalVector(dm, &r);
    1004:   PetscObjectSetName((PetscObject) r, "solution error");
    1005:   DMProjectFunction(dm, 0.0, user->exactFuncs, NULL, INSERT_ALL_VALUES, r);
    1006:   VecAXPY(r, -1.0, u);
    1007:   /* View error */
    1008:   PetscObjectComposedDataGetInt((PetscObject) snes, PetscMGLevelId, level, hasLevel);
    1009:   PetscSNPrintf(buf, 256, "ex12-%D.h5", level);
    1010: #if defined(PETSC_HAVE_HDF5)
    1011:   PetscViewerHDF5Open(PETSC_COMM_WORLD, buf, FILE_MODE_APPEND, &viewer);
    1012:   VecView(r, viewer);
    1013:   PetscViewerDestroy(&viewer);
    1014:   /* Cleanup */
    1015:   DMRestoreGlobalVector(dm, &r);
    1016:   return(0);
    1017: #else
    1018:   SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"You need to configure with --download-hdf5");
    1019: #endif
    1020: }

    1022: int main(int argc, char **argv)
    1023: {
    1024:   DM             dm;          /* Problem specification */
    1025:   SNES           snes;        /* nonlinear solver */
    1026:   Vec            u;           /* solution vector */
    1027:   Mat            A,J;         /* Jacobian matrix */
    1028:   MatNullSpace   nullSpace;   /* May be necessary for Neumann conditions */
    1029:   AppCtx         user;        /* user-defined work context */
    1030:   JacActionCtx   userJ;       /* context for Jacobian MF action */
    1031:   PetscReal      error = 0.0; /* L_2 error in the solution */
    1032:   PetscBool      isFAS;

    1035:   PetscInitialize(&argc, &argv, NULL,help);if (ierr) return ierr;
    1036:   ProcessOptions(PETSC_COMM_WORLD, &user);
    1037:   SNESCreate(PETSC_COMM_WORLD, &snes);
    1038:   CreateMesh(PETSC_COMM_WORLD, &user, &dm);
    1039:   SNESSetDM(snes, dm);
    1040:   DMSetApplicationContext(dm, &user);

    1042:   PetscMalloc2(1, &user.exactFuncs, 1, &user.exactFields);
    1043:   SetupDiscretization(dm, &user);

    1045:   DMCreateGlobalVector(dm, &u);
    1046:   PetscObjectSetName((PetscObject) u, "potential");

    1048:   DMCreateMatrix(dm, &J);
    1049:   if (user.jacobianMF) {
    1050:     PetscInt M, m, N, n;

    1052:     MatGetSize(J, &M, &N);
    1053:     MatGetLocalSize(J, &m, &n);
    1054:     MatCreate(PETSC_COMM_WORLD, &A);
    1055:     MatSetSizes(A, m, n, M, N);
    1056:     MatSetType(A, MATSHELL);
    1057:     MatSetUp(A);
    1058: #if 0
    1059:     MatShellSetOperation(A, MATOP_MULT, (void (*)(void))FormJacobianAction);
    1060: #endif

    1062:     userJ.dm   = dm;
    1063:     userJ.J    = J;
    1064:     userJ.user = &user;

    1066:     DMCreateLocalVector(dm, &userJ.u);
    1067:     if (user.fieldBC) {DMProjectFieldLocal(dm, 0.0, userJ.u, user.exactFields, INSERT_BC_VALUES, userJ.u);}
    1068:     else              {DMProjectFunctionLocal(dm, 0.0, user.exactFuncs, NULL, INSERT_BC_VALUES, userJ.u);}
    1069:     MatShellSetContext(A, &userJ);
    1070:   } else {
    1071:     A = J;
    1072:   }

    1074:   nullSpace = NULL;
    1075:   if (user.bcType != DIRICHLET) {
    1076:     MatNullSpaceCreate(PetscObjectComm((PetscObject) dm), PETSC_TRUE, 0, NULL, &nullSpace);
    1077:     MatSetNullSpace(A, nullSpace);
    1078:   }

    1080:   DMPlexSetSNESLocalFEM(dm,&user,&user,&user);
    1081:   SNESSetJacobian(snes, A, J, NULL, NULL);

    1083:   SNESSetFromOptions(snes);

    1085:   if (user.fieldBC) {DMProjectField(dm, 0.0, u, user.exactFields, INSERT_ALL_VALUES, u);}
    1086:   else              {DMProjectFunction(dm, 0.0, user.exactFuncs, NULL, INSERT_ALL_VALUES, u);}
    1087:   if (user.restart) {
    1088: #if defined(PETSC_HAVE_HDF5)
    1089:     PetscViewer viewer;

    1091:     PetscViewerCreate(PETSC_COMM_WORLD, &viewer);
    1092:     PetscViewerSetType(viewer, PETSCVIEWERHDF5);
    1093:     PetscViewerFileSetMode(viewer, FILE_MODE_READ);
    1094:     PetscViewerFileSetName(viewer, user.filename);
    1095:     PetscViewerHDF5PushGroup(viewer, "/fields");
    1096:     VecLoad(u, viewer);
    1097:     PetscViewerHDF5PopGroup(viewer);
    1098:     PetscViewerDestroy(&viewer);
    1099: #endif
    1100:   }
    1101:   if (user.showInitial) {
    1102:     Vec lv;
    1103:     DMGetLocalVector(dm, &lv);
    1104:     DMGlobalToLocalBegin(dm, u, INSERT_VALUES, lv);
    1105:     DMGlobalToLocalEnd(dm, u, INSERT_VALUES, lv);
    1106:     DMPrintLocalVec(dm, "Local function", 1.0e-10, lv);
    1107:     DMRestoreLocalVector(dm, &lv);
    1108:   }
    1109:   if (user.viewHierarchy) {
    1110:     SNES      lsnes;
    1111:     KSP       ksp;
    1112:     PC        pc;
    1113:     PetscInt  numLevels, l;
    1114:     PetscBool isMG;

    1116:     PetscObjectTypeCompare((PetscObject) snes, SNESFAS, &isFAS);
    1117:     if (isFAS) {
    1118:       SNESFASGetLevels(snes, &numLevels);
    1119:       for (l = 0; l < numLevels; ++l) {
    1120:         SNESFASGetCycleSNES(snes, l, &lsnes);
    1121:         SNESMonitorSet(lsnes, SNESMonitorError, &user, NULL);
    1122:       }
    1123:     } else {
    1124:       SNESGetKSP(snes, &ksp);
    1125:       KSPGetPC(ksp, &pc);
    1126:       PetscObjectTypeCompare((PetscObject) pc, PCMG, &isMG);
    1127:       if (isMG) {
    1128:         user.pcmg = pc;
    1129:         PCMGGetLevels(pc, &numLevels);
    1130:         for (l = 0; l < numLevels; ++l) {
    1131:           PCMGGetSmootherDown(pc, l, &ksp);
    1132:           KSPMonitorSet(ksp, MonitorError, &user, NULL);
    1133:         }
    1134:       }
    1135:     }
    1136:   }
    1137:   if (user.runType == RUN_FULL || user.runType == RUN_EXACT) {
    1138:     PetscErrorCode (*initialGuess[1])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx) = {zero};

    1140:     if (user.nonzInit) initialGuess[0] = ecks;
    1141:     if (user.runType == RUN_FULL) {
    1142:       DMProjectFunction(dm, 0.0, initialGuess, NULL, INSERT_VALUES, u);
    1143:     }
    1144:     if (user.debug) {
    1145:       PetscPrintf(PETSC_COMM_WORLD, "Initial guess\n");
    1146:       VecView(u, PETSC_VIEWER_STDOUT_WORLD);
    1147:     }
    1148:     VecViewFromOptions(u, NULL, "-guess_vec_view");
    1149:     SNESSolve(snes, NULL, u);
    1150:     SNESGetSolution(snes, &u);
    1151:     SNESGetDM(snes, &dm);

    1153:     if (user.showSolution) {
    1154:       PetscPrintf(PETSC_COMM_WORLD, "Solution\n");
    1155:       VecChop(u, 3.0e-9);
    1156:       VecView(u, PETSC_VIEWER_STDOUT_WORLD);
    1157:     }
    1158:   } else if (user.runType == RUN_PERF) {
    1159:     Vec       r;
    1160:     PetscReal res = 0.0;

    1162:     SNESGetFunction(snes, &r, NULL, NULL);
    1163:     SNESComputeFunction(snes, u, r);
    1164:     PetscPrintf(PETSC_COMM_WORLD, "Initial Residual\n");
    1165:     VecChop(r, 1.0e-10);
    1166:     VecNorm(r, NORM_2, &res);
    1167:     PetscPrintf(PETSC_COMM_WORLD, "L_2 Residual: %g\n", (double)res);
    1168:   } else {
    1169:     Vec       r;
    1170:     PetscReal res = 0.0, tol = 1.0e-11;

    1172:     /* Check discretization error */
    1173:     SNESGetFunction(snes, &r, NULL, NULL);
    1174:     PetscPrintf(PETSC_COMM_WORLD, "Initial guess\n");
    1175:     if (!user.quiet) {VecView(u, PETSC_VIEWER_STDOUT_WORLD);}
    1176:     DMComputeL2Diff(dm, 0.0, user.exactFuncs, NULL, u, &error);
    1177:     if (error < tol) {PetscPrintf(PETSC_COMM_WORLD, "L_2 Error: < %2.1e\n", (double)tol);}
    1178:     else             {PetscPrintf(PETSC_COMM_WORLD, "L_2 Error: %g\n", (double)error);}
    1179:     /* Check residual */
    1180:     SNESComputeFunction(snes, u, r);
    1181:     PetscPrintf(PETSC_COMM_WORLD, "Initial Residual\n");
    1182:     VecChop(r, 1.0e-10);
    1183:     if (!user.quiet) {VecView(r, PETSC_VIEWER_STDOUT_WORLD);}
    1184:     VecNorm(r, NORM_2, &res);
    1185:     PetscPrintf(PETSC_COMM_WORLD, "L_2 Residual: %g\n", (double)res);
    1186:     /* Check Jacobian */
    1187:     {
    1188:       Vec b;

    1190:       SNESComputeJacobian(snes, u, A, A);
    1191:       VecDuplicate(u, &b);
    1192:       VecSet(r, 0.0);
    1193:       SNESComputeFunction(snes, r, b);
    1194:       MatMult(A, u, r);
    1195:       VecAXPY(r, 1.0, b);
    1196:       PetscPrintf(PETSC_COMM_WORLD, "Au - b = Au + F(0)\n");
    1197:       VecChop(r, 1.0e-10);
    1198:       if (!user.quiet) {VecView(r, PETSC_VIEWER_STDOUT_WORLD);}
    1199:       VecNorm(r, NORM_2, &res);
    1200:       PetscPrintf(PETSC_COMM_WORLD, "Linear L_2 Residual: %g\n", (double)res);
    1201:       /* check solver */
    1202:       if (user.checkksp) {
    1203:         KSP ksp;

    1205:         if (nullSpace) {
    1206:           MatNullSpaceRemove(nullSpace, u);
    1207:         }
    1208:         SNESComputeJacobian(snes, u, A, J);
    1209:         MatMult(A, u, b);
    1210:         SNESGetKSP(snes, &ksp);
    1211:         KSPSetOperators(ksp, A, J);
    1212:         KSPSolve(ksp, b, r);
    1213:         VecAXPY(r, -1.0, u);
    1214:         VecNorm(r, NORM_2, &res);
    1215:         PetscPrintf(PETSC_COMM_WORLD, "KSP Error: %g\n", (double)res);
    1216:       }
    1217:       VecDestroy(&b);
    1218:     }
    1219:   }
    1220:   VecViewFromOptions(u, NULL, "-vec_view");
    1221:   {
    1222:     Vec nu;

    1224:     PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &nu);
    1225:     if (nu) {VecViewFromOptions(nu, NULL, "-coeff_view");}
    1226:   }

    1228:   if (user.bdIntegral) {
    1229:     DMLabel   label;
    1230:     PetscInt  id = 1;
    1231:     PetscScalar bdInt = 0.0;
    1232:     PetscReal   exact = 3.3333333333;

    1234:     DMGetLabel(dm, "marker", &label);
    1235:     DMPlexComputeBdIntegral(dm, u, label, 1, &id, bd_integral_2d, &bdInt, NULL);
    1236:     PetscPrintf(PETSC_COMM_WORLD, "Solution boundary integral: %.4g\n", (double) PetscAbsScalar(bdInt));
    1237:     if (PetscAbsReal(PetscAbsScalar(bdInt) - exact) > PETSC_SQRT_MACHINE_EPSILON) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_PLIB, "Invalid boundary integral %g != %g", (double) PetscAbsScalar(bdInt), (double)exact);
    1238:   }

    1240:   MatNullSpaceDestroy(&nullSpace);
    1241:   if (user.jacobianMF) {VecDestroy(&userJ.u);}
    1242:   if (A != J) {MatDestroy(&A);}
    1243:   MatDestroy(&J);
    1244:   VecDestroy(&u);
    1245:   SNESDestroy(&snes);
    1246:   DMDestroy(&dm);
    1247:   PetscFree2(user.exactFuncs, user.exactFields);
    1248:   PetscFree(user.kgrid);
    1249:   PetscFinalize();
    1250:   return ierr;
    1251: }

    1253: /*TEST
    1254:   # 2D serial P1 test 0-4
    1255:   test:
    1256:     suffix: 2d_p1_0
    1257:     requires: triangle
    1258:     args: -run_type test -refinement_limit 0.0    -bc_type dirichlet -interpolate 0 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1

    1260:   test:
    1261:     suffix: 2d_p1_1
    1262:     requires: triangle
    1263:     args: -run_type test -refinement_limit 0.0    -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1

    1265:   test:
    1266:     suffix: 2d_p1_2
    1267:     requires: triangle
    1268:     args: -run_type test -refinement_limit 0.0625 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1

    1270:   test:
    1271:     suffix: 2d_p1_neumann_0
    1272:     requires: triangle
    1273:     args: -run_type test -refinement_limit 0.0    -bc_type neumann   -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view ascii::ascii_info_detail

    1275:   test:
    1276:     suffix: 2d_p1_neumann_1
    1277:     requires: triangle
    1278:     args: -run_type test -refinement_limit 0.0625 -bc_type neumann   -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1

    1280:   # 2D serial P2 test 5-8
    1281:   test:
    1282:     suffix: 2d_p2_0
    1283:     requires: triangle
    1284:     args: -run_type test -refinement_limit 0.0    -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1286:   test:
    1287:     suffix: 2d_p2_1
    1288:     requires: triangle
    1289:     args: -run_type test -refinement_limit 0.0625 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1291:   test:
    1292:     suffix: 2d_p2_neumann_0
    1293:     requires: triangle
    1294:     args: -run_type test -refinement_limit 0.0    -bc_type neumann   -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -dm_view ascii::ascii_info_detail

    1296:   test:
    1297:     suffix: 2d_p2_neumann_1
    1298:     requires: triangle
    1299:     args: -run_type test -refinement_limit 0.0625 -bc_type neumann   -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -dm_view ascii::ascii_info_detail

    1301:   test:
    1302:     suffix: bd_int_0
    1303:     requires: triangle
    1304:     args: -run_type test -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -bd_integral -dm_view -quiet

    1306:   test:
    1307:     suffix: bd_int_1
    1308:     requires: triangle
    1309:     args: -run_type test -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -bd_integral -dm_view -quiet

    1311:   # 3D serial P1 test 9-12
    1312:   test:
    1313:     suffix: 3d_p1_0
    1314:     requires: ctetgen
    1315:     args: -run_type test -dim 3 -refinement_limit 0.0    -bc_type dirichlet -interpolate 0 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1

    1317:   test:
    1318:     suffix: 3d_p1_1
    1319:     requires: ctetgen
    1320:     args: -run_type test -dim 3 -refinement_limit 0.0    -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1

    1322:   test:
    1323:     suffix: 3d_p1_2
    1324:     requires: ctetgen
    1325:     args: -run_type test -dim 3 -refinement_limit 0.0125 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1

    1327:   test:
    1328:     suffix: 3d_p1_neumann_0
    1329:     requires: ctetgen
    1330:     args: -run_type test -dim 3 -bc_type neumann   -interpolate 1 -petscspace_degree 1 -snes_fd -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1

    1332:   # Analytic variable coefficient 13-20
    1333:   test:
    1334:     suffix: 13
    1335:     requires: triangle
    1336:     args: -run_type test -refinement_limit 0.0    -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1
    1337:   test:
    1338:     suffix: 14
    1339:     requires: triangle
    1340:     args: -run_type test -refinement_limit 0.0625 -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1
    1341:   test:
    1342:     suffix: 15
    1343:     requires: triangle
    1344:     args: -run_type test -refinement_limit 0.0    -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1
    1345:   test:
    1346:     suffix: 16
    1347:     requires: triangle
    1348:     args: -run_type test -refinement_limit 0.0625 -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1
    1349:   test:
    1350:     suffix: 17
    1351:     requires: ctetgen
    1352:     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1354:   test:
    1355:     suffix: 18
    1356:     requires: ctetgen
    1357:     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1359:   test:
    1360:     suffix: 19
    1361:     requires: ctetgen
    1362:     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1364:   test:
    1365:     suffix: 20
    1366:     requires: ctetgen
    1367:     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1369:   # P1 variable coefficient 21-28
    1370:   test:
    1371:     suffix: 21
    1372:     requires: triangle
    1373:     args: -run_type test -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1

    1375:   test:
    1376:     suffix: 22
    1377:     requires: triangle
    1378:     args: -run_type test -refinement_limit 0.0625 -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1

    1380:   test:
    1381:     suffix: 23
    1382:     requires: triangle
    1383:     args: -run_type test -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1

    1385:   test:
    1386:     suffix: 24
    1387:     requires: triangle
    1388:     args: -run_type test -refinement_limit 0.0625 -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1

    1390:   test:
    1391:     suffix: 25
    1392:     requires: ctetgen
    1393:     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1395:   test:
    1396:     suffix: 26
    1397:     requires: ctetgen
    1398:     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1400:   test:
    1401:     suffix: 27
    1402:     requires: ctetgen
    1403:     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1405:   test:
    1406:     suffix: 28
    1407:     requires: ctetgen
    1408:     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1410:   # P0 variable coefficient 29-36
    1411:   test:
    1412:     suffix: 29
    1413:     requires: triangle
    1414:     args: -run_type test -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1

    1416:   test:
    1417:     suffix: 30
    1418:     requires: triangle
    1419:     args: -run_type test -refinement_limit 0.0625 -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1

    1421:   test:
    1422:     suffix: 31
    1423:     requires: triangle
    1424:     args: -run_type test -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1426:   test:
    1427:     requires: triangle
    1428:     suffix: 32
    1429:     args: -run_type test -refinement_limit 0.0625 -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1431:   test:
    1432:     requires: ctetgen
    1433:     suffix: 33
    1434:     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1436:   test:
    1437:     suffix: 34
    1438:     requires: ctetgen
    1439:     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1441:   test:
    1442:     suffix: 35
    1443:     requires: ctetgen
    1444:     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1446:   test:
    1447:     suffix: 36
    1448:     requires: ctetgen
    1449:     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1451:   # Full solve 39-44
    1452:   test:
    1453:     suffix: 39
    1454:     requires: triangle !single
    1455:     args: -run_type full -refinement_limit 0.015625 -interpolate 1 -petscspace_degree 2 -pc_type gamg -ksp_rtol 1.0e-10 -ksp_monitor_short -ksp_converged_reason -snes_monitor_short -snes_converged_reason ::ascii_info_detail
    1456:   test:
    1457:     suffix: 40
    1458:     requires: triangle !single
    1459:     args: -run_type full -refinement_limit 0.015625 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 2 -pc_type svd -ksp_rtol 1.0e-10 -snes_monitor_short -snes_converged_reason ::ascii_info_detail
    1460:   test:
    1461:     suffix: 41
    1462:     requires: triangle !single
    1463:     args: -run_type full -refinement_limit 0.03125 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short
    1464:   test:
    1465:     suffix: 42
    1466:     requires: triangle !single
    1467:     args: -run_type full -refinement_limit 0.0625 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 2 -dm_plex_print_fem 0 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short -fas_levels_2_snes_type newtonls -fas_levels_2_pc_type svd -fas_levels_2_ksp_rtol 1.0e-10 -fas_levels_2_snes_atol 1.0e-11 -fas_levels_2_snes_monitor_short
    1468:   test:
    1469:     suffix: 43
    1470:     requires: triangle !single
    1471:     nsize: 2
    1472:     args: -run_type full -refinement_limit 0.03125 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short

    1474:   test:
    1475:     suffix: 44
    1476:     requires: triangle !single
    1477:     nsize: 2
    1478:     args: -run_type full -refinement_limit 0.0625 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short  -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 2 -dm_plex_print_fem 0 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short -fas_levels_2_snes_type newtonls -fas_levels_2_pc_type svd -fas_levels_2_ksp_rtol 1.0e-10 -fas_levels_2_snes_atol 1.0e-11 -fas_levels_2_snes_monitor_short

    1480:   # These tests use a loose tolerance just to exercise the PtAP operations for MATIS and multiple PCBDDC setup calls inside PCMG
    1481:   testset:
    1482:     requires: triangle !single
    1483:     nsize: 3
    1484:     args: -interpolate -run_type full -petscspace_degree 1 -dm_mat_type is -pc_type mg -pc_mg_levels 2 -mg_coarse_pc_type bddc -pc_mg_galerkin pmat -ksp_rtol 1.0e-2 -snes_converged_reason -dm_refine_hierarchy 2 -snes_max_it 4
    1485:     test:
    1486:       suffix: gmg_bddc
    1487:       filter: sed -e "s/CONVERGED_FNORM_RELATIVE iterations 3/CONVERGED_FNORM_RELATIVE iterations 4/g"
    1488:       args: -mg_levels_pc_type jacobi
    1489:     test:
    1490:       filter: sed -e "s/iterations [0-4]/iterations 4/g"
    1491:       suffix: gmg_bddc_lev
    1492:       args: -mg_levels_pc_type bddc

    1494:   # Restarting
    1495:   testset:
    1496:     suffix: restart
    1497:     requires: hdf5 triangle !complex
    1498:     args: -run_type test -refinement_limit 0.0    -bc_type dirichlet -interpolate 1 -petscspace_degree 1
    1499:     test:
    1500:       args: -dm_view hdf5:sol.h5 -vec_view hdf5:sol.h5::append
    1501:     test:
    1502:       args: -f sol.h5 -restart

    1504:   # Periodicity
    1505:   test:
    1506:     suffix: periodic_0
    1507:     requires: triangle
    1508:     args: -run_type full -refinement_limit 0.0    -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -snes_converged_reason ::ascii_info_detail

    1510:   test:
    1511:     requires: !complex
    1512:     suffix: periodic_1
    1513:     args: -quiet -run_type test -simplex 0 -x_periodicity periodic -y_periodicity periodic -vec_view vtk:test.vtu:vtk_vtu -interpolate 1 -petscspace_degree 1 -dm_refine 1

    1515:   # 2D serial P1 test with field bc
    1516:   test:
    1517:     suffix: field_bc_2d_p1_0
    1518:     requires: triangle
    1519:     args: -run_type test              -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1521:   test:
    1522:     suffix: field_bc_2d_p1_1
    1523:     requires: triangle
    1524:     args: -run_type test -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1526:   test:
    1527:     suffix: field_bc_2d_p1_neumann_0
    1528:     requires: triangle
    1529:     args: -run_type test              -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1531:   test:
    1532:     suffix: field_bc_2d_p1_neumann_1
    1533:     requires: triangle
    1534:     args: -run_type test -dm_refine 1 -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1536:   # 3D serial P1 test with field bc
    1537:   test:
    1538:     suffix: field_bc_3d_p1_0
    1539:     requires: ctetgen
    1540:     args: -run_type test -dim 3              -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1542:   test:
    1543:     suffix: field_bc_3d_p1_1
    1544:     requires: ctetgen
    1545:     args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1547:   test:
    1548:     suffix: field_bc_3d_p1_neumann_0
    1549:     requires: ctetgen
    1550:     args: -run_type test -dim 3              -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1552:   test:
    1553:     suffix: field_bc_3d_p1_neumann_1
    1554:     requires: ctetgen
    1555:     args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1557:   # 2D serial P2 test with field bc
    1558:   test:
    1559:     suffix: field_bc_2d_p2_0
    1560:     requires: triangle
    1561:     args: -run_type test              -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1563:   test:
    1564:     suffix: field_bc_2d_p2_1
    1565:     requires: triangle
    1566:     args: -run_type test -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1568:   test:
    1569:     suffix: field_bc_2d_p2_neumann_0
    1570:     requires: triangle
    1571:     args: -run_type test              -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1573:   test:
    1574:     suffix: field_bc_2d_p2_neumann_1
    1575:     requires: triangle
    1576:     args: -run_type test -dm_refine 1 -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1

    1578:   # 3D serial P2 test with field bc
    1579:   test:
    1580:     suffix: field_bc_3d_p2_0
    1581:     requires: ctetgen
    1582:     args: -run_type test -dim 3              -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1584:   test:
    1585:     suffix: field_bc_3d_p2_1
    1586:     requires: ctetgen
    1587:     args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1589:   test:
    1590:     suffix: field_bc_3d_p2_neumann_0
    1591:     requires: ctetgen
    1592:     args: -run_type test -dim 3              -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1594:   test:
    1595:     suffix: field_bc_3d_p2_neumann_1
    1596:     requires: ctetgen
    1597:     args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1

    1599:   # Full solve simplex: Convergence
    1600:   test:
    1601:     suffix: 3d_p1_conv
    1602:     requires: ctetgen
    1603:     args: -run_type full -dim 3 -cells 1,1,1 -dm_refine 1 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 \
    1604:       -snes_convergence_estimate -convest_num_refine 1 -pc_type lu

    1606:   # Full solve simplex: PCBDDC
    1607:   test:
    1608:     suffix: tri_bddc
    1609:     requires: triangle !single
    1610:     nsize: 5
    1611:     args: -run_type full -petscpartitioner_type simple -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -dm_mat_type is -pc_type bddc -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0

    1613:   # Full solve simplex: PCBDDC
    1614:   test:
    1615:     suffix: tri_parmetis_bddc
    1616:     requires: triangle !single parmetis
    1617:     nsize: 4
    1618:     args: -run_type full -petscpartitioner_type parmetis -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -dm_mat_type is -pc_type bddc -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0

    1620:   testset:
    1621:     args: -run_type full -petscpartitioner_type simple -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -dm_mat_type is -pc_type bddc -ksp_type gmres -snes_monitor_short -ksp_monitor_short -snes_view -simplex 0 -petscspace_poly_tensor -pc_bddc_corner_selection -cells 3,3 -ksp_rtol 1.e-9 -pc_bddc_use_edges 0
    1622:     nsize: 5
    1623:     output_file: output/ex12_quad_bddc.out
    1624:     filter: sed -e "s/aijcusparse/aij/g" -e "s/aijviennacl/aij/g" -e "s/factorization: cusparse/factorization: petsc/g"
    1625:     test:
    1626:       requires: !single
    1627:       suffix: quad_bddc
    1628:     test:
    1629:       requires: !single cuda
    1630:       suffix: quad_bddc_cuda
    1631:       args: -matis_localmat_type aijcusparse -pc_bddc_dirichlet_pc_factor_mat_solver_type cusparse -pc_bddc_neumann_pc_factor_mat_solver_type cusparse
    1632:     test:
    1633:       requires: !single viennacl
    1634:       suffix: quad_bddc_viennacl
    1635:       args: -matis_localmat_type aijviennacl

    1637:   # Full solve simplex: ASM
    1638:   test:
    1639:     suffix: tri_q2q1_asm_lu
    1640:     requires: triangle !single
    1641:     args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_blocks 4 -sub_pc_type lu -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0

    1643:   test:
    1644:     suffix: tri_q2q1_msm_lu
    1645:     requires: triangle !single
    1646:     args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_local_type multiplicative -pc_asm_blocks 4 -sub_pc_type lu -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0

    1648:   test:
    1649:     suffix: tri_q2q1_asm_sor
    1650:     requires: triangle !single
    1651:     args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_blocks 4 -sub_pc_type sor -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0

    1653:   test:
    1654:     suffix: tri_q2q1_msm_sor
    1655:     requires: triangle !single
    1656:     args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_local_type multiplicative -pc_asm_blocks 4 -sub_pc_type sor -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0

    1658:   # Full solve simplex: FAS
    1659:   test:
    1660:     suffix: fas_newton_0
    1661:     requires: triangle !single
    1662:     args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short

    1664:   test:
    1665:     suffix: fas_newton_1
    1666:     requires: triangle !single
    1667:     args: -run_type full -dm_refine_hierarchy 3 -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type lu -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_snes_linesearch_type basic -fas_levels_ksp_rtol 1.0e-10 -fas_levels_snes_monitor_short
    1668:     filter: sed -e "s/total number of linear solver iterations=14/total number of linear solver iterations=15/g"

    1670:   test:
    1671:     suffix: fas_ngs_0
    1672:     requires: triangle !single
    1673:     args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type ngs -fas_levels_1_snes_monitor_short

    1675:   test:
    1676:     suffix: fas_newton_coarse_0
    1677:     requires: pragmatic triangle
    1678:     TODO: broken
    1679:     args: -run_type full -dm_refine 2 -dm_plex_hash_location -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -pc_type svd -ksp_rtol 1.0e-10 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_coarsen_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short

    1681:   test:
    1682:     suffix: mg_newton_coarse_0
    1683:     requires: triangle pragmatic
    1684:     TODO: broken
    1685:     args: -run_type full -dm_refine 3 -interpolate 1 -petscspace_degree 1 -snes_monitor_short -ksp_monitor_true_residual -snes_converged_reason ::ascii_info_detail -dm_coarsen_hierarchy 3 -dm_plex_hash_location -snes_view -dm_view -ksp_type richardson -pc_type mg  -pc_mg_levels 4 -snes_atol 1.0e-8 -ksp_atol 1.0e-8 -snes_rtol 0.0 -ksp_rtol 0.0 -ksp_norm_type unpreconditioned -mg_levels_ksp_type gmres -mg_levels_pc_type ilu -mg_levels_ksp_max_it 10

    1687:   test:
    1688:     suffix: mg_newton_coarse_1
    1689:     requires: triangle pragmatic
    1690:     TODO: broken
    1691:     args: -run_type full -dm_refine 5 -interpolate 1 -petscspace_degree 1 -dm_coarsen_hierarchy 5 -dm_plex_hash_location -dm_plex_separate_marker -dm_plex_coarsen_bd_label marker -dm_plex_remesh_bd -ksp_type richardson -ksp_rtol 1.0e-12 -pc_type mg -pc_mg_levels 3 -mg_levels_ksp_max_it 2 -snes_converged_reason ::ascii_info_detail -snes_monitor -ksp_monitor_true_residual -mg_levels_ksp_monitor_true_residual -dm_view -ksp_view

    1693:   test:
    1694:     suffix: mg_newton_coarse_2
    1695:     requires: triangle pragmatic
    1696:     TODO: broken
    1697:     args: -run_type full -dm_refine 5 -interpolate 1 -petscspace_degree 1 -dm_coarsen_hierarchy 5 -dm_plex_hash_location -dm_plex_separate_marker -dm_plex_remesh_bd -ksp_type richardson -ksp_rtol 1.0e-12 -pc_type mg -pc_mg_levels 3 -mg_levels_ksp_max_it 2 -snes_converged_reason ::ascii_info_detail -snes_monitor -ksp_monitor_true_residual -mg_levels_ksp_monitor_true_residual -dm_view -ksp_view

    1699:   # Full solve tensor
    1700:   test:
    1701:     suffix: tensor_plex_2d
    1702:     args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_refine_hierarchy 2 -cells 2,2

    1704:   test:
    1705:     suffix: tensor_p4est_2d
    1706:     requires: p4est
    1707:     args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_forest_initial_refinement 2 -dm_forest_minimum_refinement 0 -dm_plex_convert_type p4est -cells 2,2

    1709:   test:
    1710:     suffix: tensor_plex_3d
    1711:     args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dim 3 -dm_refine_hierarchy 1 -cells 2,2,2

    1713:   test:
    1714:     suffix: tensor_p4est_3d
    1715:     requires: p4est
    1716:     args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_forest_initial_refinement 1 -dm_forest_minimum_refinement 0 -dim 3 -dm_plex_convert_type p8est -cells 2,2,2

    1718:   test:
    1719:     suffix: p4est_test_q2_conformal_serial
    1720:     requires: p4est
    1721:     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -cells 2,2

    1723:   test:
    1724:     suffix: p4est_test_q2_conformal_parallel
    1725:     requires: p4est
    1726:     nsize: 7
    1727:     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -petscpartitioner_type simple -cells 2,2

    1729:   test:
    1730:     suffix: p4est_test_q2_conformal_parallel_parmetis
    1731:     requires: parmetis p4est
    1732:     nsize: 4
    1733:     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -petscpartitioner_type parmetis -cells 2,2

    1735:   test:
    1736:     suffix: p4est_test_q2_nonconformal_serial
    1737:     requires: p4est
    1738:     filter: grep -v "CG or CGNE: variant"
    1739:     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2

    1741:   test:
    1742:     suffix: p4est_test_q2_nonconformal_parallel
    1743:     requires: p4est
    1744:     filter: grep -v "CG or CGNE: variant"
    1745:     nsize: 7
    1746:     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2

    1748:   test:
    1749:     suffix: p4est_test_q2_nonconformal_parallel_parmetis
    1750:     requires: parmetis p4est
    1751:     nsize: 4
    1752:     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type parmetis -cells 2,2

    1754:   test:
    1755:     suffix: p4est_exact_q2_conformal_serial
    1756:     requires: p4est !single !complex !__float128
    1757:     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -cells 2,2

    1759:   test:
    1760:     suffix: p4est_exact_q2_conformal_parallel
    1761:     requires: p4est !single !complex !__float128
    1762:     nsize: 4
    1763:     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -cells 2,2

    1765:   test:
    1766:     suffix: p4est_exact_q2_conformal_parallel_parmetis
    1767:     requires: parmetis p4est !single
    1768:     nsize: 4
    1769:     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -petscpartitioner_type parmetis  -cells 2,2

    1771:   test:
    1772:     suffix: p4est_exact_q2_nonconformal_serial
    1773:     requires: p4est
    1774:     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2

    1776:   test:
    1777:     suffix: p4est_exact_q2_nonconformal_parallel
    1778:     requires: p4est
    1779:     nsize: 7
    1780:     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2

    1782:   test:
    1783:     suffix: p4est_exact_q2_nonconformal_parallel_parmetis
    1784:     requires: parmetis p4est
    1785:     nsize: 4
    1786:     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type parmetis -cells 2,2

    1788:   test:
    1789:     suffix: p4est_full_q2_nonconformal_serial
    1790:     requires: p4est !single
    1791:     filter: grep -v "variant HERMITIAN"
    1792:     args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type jacobi -fas_coarse_ksp_type cg -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type jacobi -fas_levels_ksp_type cg -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2

    1794:   test:
    1795:     suffix: p4est_full_q2_nonconformal_parallel
    1796:     requires: p4est !single
    1797:     filter: grep -v "variant HERMITIAN"
    1798:     nsize: 7
    1799:     args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type jacobi -fas_coarse_ksp_type cg -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type jacobi -fas_levels_ksp_type cg -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2

    1801:   test:
    1802:     suffix: p4est_full_q2_nonconformal_parallel_bddcfas
    1803:     requires: p4est !single
    1804:     filter: grep -v "variant HERMITIAN"
    1805:     nsize: 7
    1806:     args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -dm_mat_type is -fas_coarse_pc_type bddc -fas_coarse_ksp_type cg -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type bddc -fas_levels_ksp_type cg -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2

    1808:   test:
    1809:     suffix: p4est_full_q2_nonconformal_parallel_bddc
    1810:     requires: p4est !single
    1811:     filter: grep -v "variant HERMITIAN"
    1812:     nsize: 7
    1813:     args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type newtonls -dm_mat_type is -pc_type bddc -ksp_type cg -snes_monitor_short -snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2

    1815:   test:
    1816:     TODO: broken
    1817:     suffix: p4est_fas_q2_conformal_serial
    1818:     requires: p4est !complex !__float128
    1819:     args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -pc_type jacobi -ksp_type gmres -fas_coarse_pc_type svd -fas_coarse_ksp_type gmres -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type svd -fas_levels_ksp_type gmres -fas_levels_snes_monitor_short -simplex 0 -dm_refine_hierarchy 3 -cells 2,2

    1821:   test:
    1822:     TODO: broken
    1823:     suffix: p4est_fas_q2_nonconformal_serial
    1824:     requires: p4est
    1825:     args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -pc_type jacobi -ksp_type gmres -fas_coarse_pc_type jacobi -fas_coarse_ksp_type gmres -fas_coarse_ksp_monitor_true_residual -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type jacobi -fas_levels_ksp_type gmres -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2

    1827:   test:
    1828:     suffix: fas_newton_0_p4est
    1829:     requires: p4est !single !__float128
    1830:     args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2

    1832:   # Full solve simplicial AMR
    1833:   test:
    1834:     suffix: tri_p1_adapt_0
    1835:     requires: pragmatic
    1836:     TODO: broken
    1837:     args: -run_type exact -dim 2 -dm_refine 5 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient circle -snes_converged_reason ::ascii_info_detail -pc_type lu -adaptor_refinement_factor 1.0 -dm_view -dm_adapt_view -snes_adapt_initial 1

    1839:   test:
    1840:     suffix: tri_p1_adapt_1
    1841:     requires: pragmatic
    1842:     TODO: broken
    1843:     args: -run_type exact -dim 2 -dm_refine 5 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient circle -snes_converged_reason ::ascii_info_detail -pc_type lu -adaptor_refinement_factor 1.0 -dm_view -dm_adapt_iter_view -dm_adapt_view -snes_adapt_sequence 2

    1845:   test:
    1846:     suffix: tri_p1_adapt_analytic_0
    1847:     requires: pragmatic
    1848:     TODO: broken
    1849:     args: -run_type exact -dim 2 -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient cross -snes_adapt_initial 4 -adaptor_target_num 500 -adaptor_monitor -dm_view -dm_adapt_iter_view

    1851:   # Full solve tensor AMR
    1852:   test:
    1853:     suffix: quad_q1_adapt_0
    1854:     requires: p4est
    1855:     args: -run_type exact -dim 2 -simplex 0 -dm_plex_convert_type p4est -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient circle -snes_converged_reason ::ascii_info_detail -pc_type lu -dm_forest_initial_refinement 4   -snes_adapt_initial 1 -dm_view
    1856:     filter: grep -v DM_

    1858:   test:
    1859:     suffix: amr_0
    1860:     nsize: 5
    1861:     args: -run_type test -petscpartitioner_type simple -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_refine 1 -cells 2,2

    1863:   test:
    1864:     suffix: amr_1
    1865:     requires: p4est !complex
    1866:     args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_plex_convert_type p4est -dm_p4est_refine_pattern center -dm_forest_maximum_refinement 5 -dm_view vtk:amr.vtu:vtk_vtu -vec_view vtk:amr.vtu:vtk_vtu:append -cells 2,2

    1868:   test:
    1869:     suffix: p4est_solve_bddc
    1870:     requires: p4est !complex
    1871:     args: -run_type full -variable_coefficient nonlinear -nonzero_initial_guess 1 -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type newtonls -dm_mat_type is -pc_type bddc -ksp_type cg -snes_monitor_short -ksp_monitor -snes_linesearch_type bt -snes_converged_reason -snes_view -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -pc_bddc_detect_disconnected
    1872:     nsize: 4

    1874:   test:
    1875:     suffix: p4est_solve_fas
    1876:     requires: p4est
    1877:     args: -run_type full -variable_coefficient nonlinear -nonzero_initial_guess 1 -interpolate 1 -petscspace_degree 2 -snes_max_it 10 -snes_type fas -snes_linesearch_type bt -snes_fas_levels 3 -fas_coarse_snes_type newtonls -fas_coarse_snes_linesearch_type basic -fas_coarse_ksp_type cg -fas_coarse_pc_type jacobi -fas_coarse_snes_monitor_short -fas_levels_snes_max_it 4 -fas_levels_snes_type newtonls -fas_levels_snes_linesearch_type bt -fas_levels_ksp_type cg -fas_levels_pc_type jacobi -fas_levels_snes_monitor_short -fas_levels_cycle_snes_linesearch_type bt -snes_monitor_short -snes_converged_reason -snes_view -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash
    1878:     nsize: 4
    1879:     TODO: identical machine two runs produce slightly different solver trackers

    1881:   test:
    1882:     suffix: p4est_convergence_test_1
    1883:     requires: p4est
    1884:     args:  -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 2 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash
    1885:     nsize: 4

    1887:   test:
    1888:     suffix: p4est_convergence_test_2
    1889:     requires: p4est
    1890:     args: -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 3 -dm_forest_initial_refinement 3 -dm_forest_maximum_refinement 5 -dm_p4est_refine_pattern hash

    1892:   test:
    1893:     suffix: p4est_convergence_test_3
    1894:     requires: p4est
    1895:     args: -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 4 -dm_forest_initial_refinement 4 -dm_forest_maximum_refinement 6 -dm_p4est_refine_pattern hash

    1897:   test:
    1898:     suffix: p4est_convergence_test_4
    1899:     requires: p4est
    1900:     args: -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 5 -dm_forest_initial_refinement 5 -dm_forest_maximum_refinement 7 -dm_p4est_refine_pattern hash
    1901:     timeoutfactor: 5

    1903:   # Serial tests with GLVis visualization
    1904:   test:
    1905:     suffix: glvis_2d_tet_p1
    1906:     args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 1 -vec_view glvis: -f ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_plex_gmsh_periodic 0
    1907:   test:
    1908:     suffix: glvis_2d_tet_p2
    1909:     args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 2 -vec_view glvis: -f ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_plex_gmsh_periodic 0
    1910:   test:
    1911:     suffix: glvis_2d_hex_p1
    1912:     args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 1 -vec_view glvis: -simplex 0 -dm_refine 1
    1913:   test:
    1914:     suffix: glvis_2d_hex_p2
    1915:     args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 2 -vec_view glvis: -simplex 0 -dm_refine 1
    1916:   test:
    1917:     suffix: glvis_2d_hex_p2_p4est
    1918:     requires: p4est
    1919:     args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 2 -vec_view glvis: -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 1 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2 -viewer_glvis_dm_plex_enable_ncmesh
    1920:   test:
    1921:     suffix: glvis_2d_tet_p0
    1922:     args: -run_type exact  -interpolate 1 -guess_vec_view glvis: -nonzero_initial_guess 1 -f ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -petscspace_degree 0
    1923:   test:
    1924:     suffix: glvis_2d_hex_p0
    1925:     args: -run_type exact  -interpolate 1 -guess_vec_view glvis: -nonzero_initial_guess 1 -cells 5,7  -simplex 0 -petscspace_degree 0

    1927:   # PCHPDDM tests
    1928:   testset:
    1929:     nsize: 4
    1930:     requires: hpddm slepc !single define(PETSC_HAVE_DYNAMIC_LIBRARIES) define(PETSC_USE_SHARED_LIBRARIES)
    1931:     args: -run_type test -run_test_check_ksp -quiet -petscspace_degree 1 -interpolate 1 -petscpartitioner_type simple -bc_type none -simplex 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_nev 2 -pc_hpddm_coarse_p 1 -pc_hpddm_coarse_pc_type svd -ksp_rtol 1.e-10 -pc_hpddm_levels_1_st_pc_factor_shift_type INBLOCKS -ksp_converged_reason
    1932:     test:
    1933:       suffix: quad_singular_hpddm
    1934:       args: -cells 6,7
    1935:     test:
    1936:       requires: p4est
    1937:       suffix: p4est_singular_2d_hpddm
    1938:       args: -dm_plex_convert_type p4est -dm_forest_minimum_refinement 1 -dm_forest_initial_refinement 3 -dm_forest_maximum_refinement 3
    1939:     test:
    1940:       requires: p4est
    1941:       suffix: p4est_nc_singular_2d_hpddm
    1942:       args: -dm_plex_convert_type p4est -dm_forest_minimum_refinement 1 -dm_forest_initial_refinement 1 -dm_forest_maximum_refinement 3 -dm_p4est_refine_pattern hash
    1943:   testset:
    1944:     nsize: 4
    1945:     requires: hpddm slepc triangle !single define(PETSC_HAVE_DYNAMIC_LIBRARIES) define(PETSC_USE_SHARED_LIBRARIES)
    1946:     args: -run_type full -petscpartitioner_type simple -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_nev 4 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-1
    1947:     test:
    1948:       args: -pc_hpddm_coarse_mat_type baij -options_left no
    1949:       suffix: tri_hpddm_reuse_baij
    1950:     test:
    1951:       requires: !complex
    1952:       suffix: tri_hpddm_reuse
    1953:   testset:
    1954:     nsize: 4
    1955:     requires: hpddm slepc !single define(PETSC_HAVE_DYNAMIC_LIBRARIES) define(PETSC_USE_SHARED_LIBRARIES)
    1956:     args: -run_type full -petscpartitioner_type simple -cells 7,5 -dm_refine 2 -simplex 0 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_nev 4 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-1
    1957:     test:
    1958:       args: -pc_hpddm_coarse_mat_type baij -options_left no
    1959:       suffix: quad_hpddm_reuse_baij
    1960:     test:
    1961:       requires: !complex
    1962:       suffix: quad_hpddm_reuse
    1963:   testset:
    1964:     nsize: 4
    1965:     requires: hpddm slepc !single define(PETSC_HAVE_DYNAMIC_LIBRARIES) define(PETSC_USE_SHARED_LIBRARIES)
    1966:     args: -run_type full -petscpartitioner_type simple -cells 7,5 -dm_refine 2 -simplex 0 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_threshold 0.1 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-1
    1967:     test:
    1968:       args: -pc_hpddm_coarse_mat_type baij -options_left no
    1969:       suffix: quad_hpddm_reuse_threshold_baij
    1970:     test:
    1971:       requires: !complex
    1972:       suffix: quad_hpddm_reuse_threshold
    1973:   testset:
    1974:     nsize: 4
    1975:     requires: hpddm slepc parmetis !single define(PETSC_HAVE_DYNAMIC_LIBRARIES) define(PETSC_USE_SHARED_LIBRARIES)
    1976:     filter: sed -e "s/linear solver iterations=17/linear solver iterations=16/g"
    1977:     args: -run_type full -petscpartitioner_type parmetis -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -snes_converged_reason ::ascii_info_detail -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type icc -pc_hpddm_levels_1_eps_nev 20 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-10 -f ${PETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -pc_hpddm_levels_1_sub_pc_factor_levels 3 -variable_coefficient circle -dm_plex_gmsh_periodic 0
    1978:     test:
    1979:       args: -pc_hpddm_coarse_mat_type baij -options_left no
    1980:       filter: grep -v "      total: nonzeros=" | grep -v "      rows=" | sed -e "s/total number of linear solver iterations=1[5-7]/total number of linear solver iterations=16/g"
    1981:       suffix: tri_parmetis_hpddm_baij
    1982:     test:
    1983:       filter: grep -v "      total: nonzeros=" | grep -v "      rows=" | sed -e "s/total number of linear solver iterations=1[5-7]/total number of linear solver iterations=16/g"
    1984:       requires: !complex
    1985:       suffix: tri_parmetis_hpddm

    1987:   # 2D serial P1 tests for adaptive MG
    1988:   test:
    1989:     suffix: 2d_p1_adaptmg_0
    1990:     requires: triangle bamg
    1991:     args: -dm_refine_hierarchy 3 -cells 4,4 -interpolate -bc_type dirichlet -petscspace_degree 1 \
    1992:           -variable_coefficient checkerboard_0 -mat_petscspace_degree 0 -div 16 -k 3 \
    1993:           -snes_max_it 1 -ksp_converged_reason \
    1994:           -ksp_rtol 1e-8 -pc_type mg
    1995:   # -ksp_monitor_true_residual -ksp_converged_reason -mg_levels_ksp_monitor_true_residual -pc_mg_mesp_monitor -dm_adapt_interp_view_fine draw -dm_adapt_interp_view_coarse draw -draw_pause 1
    1996:   test:
    1997:     suffix: 2d_p1_adaptmg_1
    1998:     requires: triangle bamg
    1999:     args: -dm_refine_hierarchy 3 -cells 4,4 -interpolate -bc_type dirichlet -petscspace_degree 1 \
    2000:           -variable_coefficient checkerboard_0 -mat_petscspace_degree 0 -div 16 -k 3 \
    2001:           -snes_max_it 1 -ksp_converged_reason \
    2002:           -ksp_rtol 1e-8 -pc_type mg -pc_mg_galerkin -pc_mg_adapt_interp -pc_mg_adapt_interp_coarse_space eigenvector -pc_mg_adapt_interp_n 1 \
    2003:             -pc_mg_mesp_ksp_type richardson -pc_mg_mesp_ksp_richardson_self_scale -pc_mg_mesp_ksp_max_it 100 -pc_mg_mesp_pc_type none

    2005: TEST*/